rs233798233 SNP Detail

Summary

• ID
  rs233798233
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3030400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACGTCC TAAAGTGTGT
  ATTTCTCATT TTCTGTGATT ATCAGTTTTC TCACCATATT CCAGGTCCTA CAGTGTGCAT
  TTCTCATTTT TCACGTTTTT CAGTGATTTC GTCATTTTTC AAGTTGTCAA GTGGAAGTTT
  CTCATTTTCC ATGATTTTCA GCTTTCTAGC CATATTCCAG GTCCTACAGT GGACATTTCC
  T
  AATTTTCGAC CTTTATCAGT TTTCCTCGCC ATATTTCACG TCCCAAAATG TGTATTTCTT
  ATTTTCCATG ATTTTCAGTT TCCTCGCCAT ATTCCAGGTC CTACAGTGTG CATTTCTCAT
  TTTTCACGTT TTTCAGTGAT TTCGTCTTTT TTCAAGACGT CAAGTGGATG TTTCTCATTT
  TTCATGATTT TCAGTTTTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376472667	MGP_WTSI_9_3030400	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233798233					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376472667	MGP_WTSI_9_3030400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3030400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21325	CpG island 21325	690 bp distal
Cpgi21326	CpG island 21326	1487 bp proximal
Cpgi21327	CpG island 21327	1951 bp proximal
Rr673609	regulatory region 673609	1730 bp distal
Rr673610	regulatory region 673610	360 bp distal
Rr673611	regulatory region 673611	within coordinates
Rr673612	regulatory region 673612	1731 bp proximal
Tssr83588	transcription start site region 83588	1005 bp downstream
Tssr83589	transcription start site region 83589	724 bp downstream
Tssr83590	transcription start site region 83590	224 bp downstream
Tssr83591	transcription start site region 83591	668 bp upstream
Tssr83592	transcription start site region 83592	698 bp upstream
Tssr83593	transcription start site region 83593	1484 bp upstream
Tssr83594	transcription start site region 83594	1599 bp upstream
Tssr83595	transcription start site region 83595	1947 bp upstream
Tssr88023	transcription start site region 88023	980 bp upstream
Tssr88024	transcription start site region 88024	1511 bp downstream