rs233799659 SNP Detail

Summary

• ID
  rs233799659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTCTATG TAGACCAGGT TGGCCTCTGC CCCTTGAGTG
  GTGGAACTAA AGGTGTCTGT TACCAAGTGT GGCTTGTGAC ATGGATGTGA GAGATCTGAA
  Y
  TCTGATGCTT GCACAGCGAG CCCTCTCACT ACTGAGCCGT CTCTCCGGCC CACGGTGCAT
  ACATTCACAT TTTGATCCTC TTGCTTCTGC ATCCCAAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584260	CHEV_2_156941790	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233799659					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957974 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1094 bp distal
Rr568436	regulatory region 568436	900 bp proximal
Rr568437	regulatory region 568437	1073 bp proximal
Rr568438	regulatory region 568438	1474 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27143	transcription start site region 27143	1728 bp upstream