rs233809377 SNP Detail

Summary

• ID
  rs233809377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113881215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT AAAATACTAG AAAAAGTAAA
  M
  GCAGAATTTG AAAGTTAGGC ATGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss639705915	FVB_NJ_2_113876470	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	C	A	C	C	A	A	A	A	A	A	A	C	A	C	C	A	A	C	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	C	C	A	A	A	C	A	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233809377					SNP	A	A	A	A	C	A	A	C	A	C	C	A	A	A	A	A	A	A	C	A	C	C	A	A	C	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	C	C	A	A	A	C	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639705915	FVB_NJ_2_113876470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113881215 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562817	regulatory region 562817	1572 bp proximal
Tssr602	transcription start site region 602	254 bp upstream
Tssr19435	transcription start site region 19435	1556 bp downstream
Tssr19436	transcription start site region 19436	1152 bp downstream
Tssr19437	transcription start site region 19437	430 bp downstream
Tssr19438	transcription start site region 19438	314 bp downstream
Tssr19439	transcription start site region 19439	281 bp downstream
Tssr25670	transcription start site region 25670	1492 bp upstream
Tssr25671	transcription start site region 25671	1429 bp upstream
Tssr25672	transcription start site region 25672	1412 bp upstream
Tssr25673	transcription start site region 25673	1381 bp upstream
Tssr25674	transcription start site region 25674	1135 bp upstream
Tssr25675	transcription start site region 25675	1103 bp upstream
Tssr25676	transcription start site region 25676	1080 bp upstream
Tssr25677	transcription start site region 25677	1055 bp upstream
Tssr25678	transcription start site region 25678	390 bp upstream
Tssr25679	transcription start site region 25679	380 bp upstream
Tssr25680	transcription start site region 25680	369 bp upstream
Tssr25681	transcription start site region 25681	285 bp upstream
Tssr25682	transcription start site region 25682	246 bp upstream
Tssr25683	transcription start site region 25683	237 bp upstream
Tssr25684	transcription start site region 25684	119 bp upstream
Tssr25685	transcription start site region 25685	221 bp downstream
Tssr25686	transcription start site region 25686	564 bp downstream
Tssr25687	transcription start site region 25687	1195 bp downstream
Tssr25688	transcription start site region 25688	1259 bp downstream
Tssr25689	transcription start site region 25689	1325 bp downstream
Tssr25690	transcription start site region 25690	1343 bp downstream
Tssr25691	transcription start site region 25691	1465 bp downstream