rs233812575 SNP Detail

Summary

• ID
  rs233812575
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGCATT TTTTTTTCTA
  CAGCAGCAGT AATGAAATTC TCAGATAAAA CTATTGTCTG ACAAGTTTCT CCAAGAAGTG
  GTTAGGTTGC TCAGAATCAT AAAAGAATTT TGGTGGCTTG TGAAGTAGTC GCTGTGATAT
  ACATCCAGAC ATATAGAAAA ATATAGGTAT TATGACACAG AATGTTTTGG TCTTAGATTA
  W
  AAAAAAATGC TAGGGACTAG TATCTGAAAT CATTAGAATA CTAAGCTATT TAATGTAAAT
  TTTCCTGCTA TAAACTTTCA TTCATTACAA ATAATGTTTT TCTTTTATTT ACTCAAAGTA
  CTCTTCTACT CTAAGATAAC ATTATATTAT TTAGTAAGTA GAGTGACAGA GAGATTATAG
  GCATAGAATA ATTCCTAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357906218	MGP_WTSI_3_50170590	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	T	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	T	T	T	T	T	A	T	T	A	T	A	T	T	T	A	A	T	A	T	T	T	A	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233812575					SNP	A	A	T	T	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	T	T	T	T	T	A	T	T	A	T	A	T	T	T	A	A	T	A	T	T	T	A	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357906218	MGP_WTSI_3_50170590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321117 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	238 bp upstream
Tssr33102	transcription start site region 33102	215 bp upstream
Tssr33103	transcription start site region 33103	141 bp upstream
Tssr33104	transcription start site region 33104	127 bp upstream
Tssr33105	transcription start site region 33105	43 bp upstream
Tssr33106	transcription start site region 33106	22 bp upstream
Tssr33107	transcription start site region 33107	within coordinates
Tssr33108	transcription start site region 33108	55 bp downstream
Tssr33109	transcription start site region 33109	120 bp downstream
Tssr33110	transcription start site region 33110	174 bp downstream
Tssr33111	transcription start site region 33111	207 bp downstream
Tssr33112	transcription start site region 33112	246 bp downstream
Tssr33113	transcription start site region 33113	292 bp downstream
Tssr33114	transcription start site region 33114	316 bp downstream
Tssr33115	transcription start site region 33115	375 bp downstream
Tssr33116	transcription start site region 33116	780 bp downstream
Tssr33117	transcription start site region 33117	1010 bp downstream
Tssr33118	transcription start site region 33118	1037 bp downstream
Tssr33119	transcription start site region 33119	1063 bp downstream
Tssr33120	transcription start site region 33120	1613 bp downstream
Tssr33121	transcription start site region 33121	1906 bp downstream
Tssr33122	transcription start site region 33122	2000 bp downstream