rs233815280 SNP Detail

Summary

• ID
  rs233815280
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108256087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGGAAA AGCAGTAAGC
  CTGGATTCTC AGGCAGGGTT GAGATCAGAC TCTGGGGGGT GCGGGTGGGG CTTCTGCAAG
  GTCAGGGCCA CGTAGTTGTT TGTTTAACAT AGTGAAGAGC CAAGTAGGAA AAGATATGCC
  CTTGGAGGTT GCTGGGGAAC GCCTGTGGCA CACACCCTCC CCCTCTCCCC CCCTCCCCCC
  A
  TCCCCCCATC CCCCCAACGC TCCTGCCTCG CCCCACCCCA GAGCTGGAAC TTTGGGCTTC
  AGAGACTCAT TGTGGCACAG TGTATCTCTC TGCGGGGATT GTTTGCTTAG TGACACATCT
  TCCTGATACC TTGTGGTCAT TCAACTGGCT AGGCTGGAAG TGTGTGCCAG CTTACTGAGT
  CAGCTGCTGG AAGGACTGTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J
ss384635070	MGP_WTSI_11_108226575	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J
rs233815280					SNP	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384635070	MGP_WTSI_11_108226575	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108256087 () rs orientation: forward

Symbol	Name	Function Class
Gm36709	predicted gene, 36709	1569 bp downstream
Rr458663	regulatory region 458663	865 bp distal
Rr458664	regulatory region 458664	within coordinates
Rr458665	regulatory region 458665	445 bp proximal