rs233830076 SNP Detail

Summary

• ID
  rs233830076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94900393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTAAAA TCTATGTTGG
  AACTCCTTCC TCCTCGGTTA ACCTTTTATT GGGGGGCGGG GCAGGAAGTA ATAGAATGAA
  GTATCAACCC TCCCACCTCA ATTTTCTCTA CTGGTCCATC CACCCTGCAA TGCCCAGGAG
  TAAGTCTCCC ATAGCTTGGC CAGCAGGAGT AGCCACACTT CTCTAGGAAT CTTCCCTGTG
  Y
  CCTTCTCCAG TGCCTCGGGT GCACGCCCCC TCCAGAACTT AAAGAGTCTT TCCCGCTCCT
  GGGCCCACAG TTCTCAGGCT TGGGAAGTCC CATTTGGCTG AATCAAGACT ACACCGGACC
  ACGTCTGTTC TGTTCAACGG CGGTCCCCTT CTGCTTCAGC GCCCCAGGCT GGCCGCTCGC
  CCGGCAAATG CTTGTTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384337412	MGP_WTSI_11_94870881	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233830076					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337412	MGP_WTSI_11_94870881	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94900393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	39 bp proximal
Gm36385	predicted gene, 36385	within coordinates
Gm51875	predicted gene, 51875	233 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr454921	regulatory region 454921	1808 bp distal
Rr454922	regulatory region 454922	1179 bp distal
Rr454923	regulatory region 454923	224 bp distal
Rr454924	regulatory region 454924	within coordinates
Rr454925	regulatory region 454925	323 bp proximal
Rr454926	regulatory region 454926	674 bp proximal
Rr454927	regulatory region 454927	1413 bp proximal
Samd14	sterile alpha motif domain containing 14	312 bp upstream
Tssr104328	transcription start site region 104328	197 bp upstream
Tssr104329	transcription start site region 104329	285 bp upstream
Tssr104330	transcription start site region 104330	331 bp upstream
Tssr104331	transcription start site region 104331	369 bp upstream
Tssr104332	transcription start site region 104332	393 bp upstream
Tssr104333	transcription start site region 104333	399 bp upstream
Tssr104334	transcription start site region 104334	508 bp upstream
Tssr104335	transcription start site region 104335	533 bp upstream
Tssr104336	transcription start site region 104336	609 bp upstream
Tssr104337	transcription start site region 104337	677 bp upstream
Tssr104338	transcription start site region 104338	710 bp upstream
Tssr104339	transcription start site region 104339	730 bp upstream
Tssr104340	transcription start site region 104340	799 bp upstream
Tssr104341	transcription start site region 104341	817 bp upstream
Tssr104342	transcription start site region 104342	905 bp upstream
Tssr110238	transcription start site region 110238	726 bp downstream