rs233830486 SNP Detail

Summary

• ID
  rs233830486
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128812700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAGGTT GTCAGGTTCC
  TGCTACAGCG AGCTTGCCAT CTGTGGAAAG GTAACTTTGT CGTATATCCC ATATATCCTG
  CGGCTAGAAC GAGGTGAGGG GCTCTGCTTT GTTTTATAAT GCCCCCCCCC TTTTTTTTTT
  ACTGGTGTGT TGATTCCATG AGGAAATAGG ATGTTAAGAC CAATTAACTC AGGGTGGACC
  W
  GCATAGCTGC TTATGGATCA CGTGAAACTG CTTGGACCAG AGACTCGCAC CTGATCACGC
  CACCTCAATT TCATCTGCAG TGGGTTTTGG CACAGGGTGA CTCTAACGTG TCCTGTGGCG
  ATACTGCAGC AAGTGGCGCG AACCTGCCTC ATCTTCGCTT GGCACGAACC AGTCACCTAC
  TCCAAGAATT TGGAAAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366668462	MGP_WTSI_5_129241511	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233830486					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366668462	MGP_WTSI_5_129241511	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128812700 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	within coordinates
Cpgi16665	CpG island 16665	212 bp proximal
Gm71554	predicted gene, 71554	within coordinates
Piwil1	piwi-like RNA-mediated gene silencing 1	435 bp upstream
Rr621172	regulatory region 621172	1320 bp distal
Rr621173	regulatory region 621173	1440 bp distal
Tssr1644	transcription start site region 1644	524 bp upstream
Tssr48983	transcription start site region 48983	450 bp upstream
Tssr48984	transcription start site region 48984	489 bp upstream
Tssr48985	transcription start site region 48985	532 bp upstream
Tssr48986	transcription start site region 48986	606 bp upstream
Tssr53471	transcription start site region 53471	375 bp downstream