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rs233839992 SNP Detail
Summary
  • ID
    rs233839992
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:123260146 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGAAGTTTG ACCGGCCTTT
CCATATGGAG ATGTCCTTGC TGAAGGCCAT GCCATTCTCC CAAGCGGCAG GTAAGTTTAA
AGACTCAAAG ATGCATCTTC CTCACTGTTG GAGAACACAG AAGTGATCTA TGTACTGATA
GATAGATAAG CTAGACCCAA GGATGTAGAA AGAACAGGAT GACATAGTGA CCATTAAAGT
M
TCTTTATACA GACATCTGCT TTCTACCTGT TCCTTCATAT CAATTCTCAT GAGCAAGACA
GATGTGCAAG ACAGATGTGA AAAGGAGAAT CCCTTTCTTC TTGTTGCATT TGTTAGAGAA
TTGATCTGTA CAGTCTAAAA AGAGGTCTTT CAGGTTATGG CAAGACCATC AGACAATGCT
GTGGACTTTT AGCAATGGGA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369922400 MGP_WTSI_6_123233205 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C A C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233839992 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369922400 MGP_WTSI_6_123233205 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:123260146 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clec4e C-type lectin domain family 4, member e within coordinates
Tssr58808 transcription start site region 58808 407 bp downstream
Tssr58809 transcription start site region 58809 205 bp upstream
Tssr58810 transcription start site region 58810 231 bp upstream
Tssr58811 transcription start site region 58811 267 bp upstream
Tssr63019 transcription start site region 63019 1615 bp upstream
Tssr63020 transcription start site region 63020 683 bp upstream
Tssr63021 transcription start site region 63021 605 bp upstream
Tssr63022 transcription start site region 63022 566 bp upstream
Tssr63023 transcription start site region 63023 511 bp upstream
Tssr63024 transcription start site region 63024 413 bp upstream
Tssr63025 transcription start site region 63025 381 bp upstream
Tssr63026 transcription start site region 63026 360 bp upstream
Tssr63027 transcription start site region 63027 322 bp upstream
Tssr63028 transcription start site region 63028 297 bp upstream
Tssr63029 transcription start site region 63029 269 bp upstream
Tssr63030 transcription start site region 63030 213 bp upstream
Tssr63031 transcription start site region 63031 183 bp upstream
Tssr63032 transcription start site region 63032 152 bp upstream
Tssr63033 transcription start site region 63033 138 bp upstream
Tssr63034 transcription start site region 63034 112 bp upstream
Tssr63035 transcription start site region 63035 97 bp upstream
Tssr63036 transcription start site region 63036 30 bp upstream
Tssr63037 transcription start site region 63037 within coordinates
Tssr63038 transcription start site region 63038 12 bp downstream
Tssr63039 transcription start site region 63039 71 bp downstream
Tssr63040 transcription start site region 63040 129 bp downstream
Tssr63041 transcription start site region 63041 178 bp downstream
Tssr63042 transcription start site region 63042 203 bp downstream
Tssr63043 transcription start site region 63043 213 bp downstream
Tssr63044 transcription start site region 63044 235 bp downstream
Tssr63045 transcription start site region 63045 326 bp downstream
Tssr63046 transcription start site region 63046 345 bp downstream
Tssr63047 transcription start site region 63047 368 bp downstream
Tssr63048 transcription start site region 63048 396 bp downstream
Tssr63049 transcription start site region 63049 411 bp downstream
Tssr63050 transcription start site region 63050 435 bp downstream
Tssr63051 transcription start site region 63051 487 bp downstream
Tssr63052 transcription start site region 63052 2000 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory