rs233854164 SNP Detail

Summary

• ID
  rs233854164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117642853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCTTC TTCTTTTTTT
  TTTTTTTTTT TTTTTTTTGT TTTTTTGAGA CAGGGTTCCT CTGTATAGCC CCGGCTGTCC
  TGGAACTCAC TCTGTAGACC AGGCTGGCCT TGAACTCAGA GGTCCACCTG CCTCTGCCTC
  CCAAGTGCTG GGATTAAAGT TGTGTGCCAC CACGCCTGGC TAGCAATGGC TTCTTATGTT
  Y
  TAACCTTGGG ACTCTCCTTG TAGTTTTTCA TCCATGTTAA ACTCTTCGAG TATTTACGTT
  GATTTACATT TCTGTGGCTA TTGGCTAAAA CACCCATTTA TGGGCCAATC GAATTTGTTT
  TGCGTTTCTA TTTTCTTATG CTCCCTTATG TGTAAGAGCG CGCTTTCCTG CATGTACTCA
  ATGTGTGTAC CTGGGGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499642	CHEV_10_117244004	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233854164					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117642853 () rs orientation: forward

Symbol	Name	Function Class
Gm67590	predicted gene, 67590	within coordinates
Rr218193	regulatory region 218193	1453 bp distal
Rr218194	regulatory region 218194	948 bp proximal
Rr218195	regulatory region 218195	1547 bp proximal
Rr221673	regulatory region 221673	473 bp distal
Rr225990	regulatory region 225990	1853 bp distal
Rr385360	regulatory region 385360	204 bp downstream
Rr402273	regulatory region 402273	1133 bp upstream