rs233855626 SNP Detail

Summary

• ID
  rs233855626
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192342149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGTGA GAGGCTGCTG
  TTCCAAGACC CTGGTGTCCA CCCTCAGCAT AGGAGGTGAG GGGCTGCTCT TCCAAGTCCC
  TGGGTTCCAC GCCCAGCACG GGAGGCAGGA GGCTGCTGTT CTTGGGCATC TTCCCAGGCA
  GCCTTTTCTG ATCTGCTTGC ATGTGGAATT CTTGTACCAT CTCTGCTGCG TCTATGGTTT
  M
  TTATCTTTCC TGCTATGTTT TTCTGACCCT TGCTGTATCA AAAAGTTCAT ACACTATCGT
  CTGTGTTTAC CATCTCGAAG AAAACCAAGA CATTCCAAGG TGCAGCCTCT GAGGAGGCTT
  TTGAGAAGAA GGCAAGGAAG GCTTGACCCC CGTTGGGACA TTGCCAGTGC AGCTTGGAGC
  CGAGGTTCTG CATAGATGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199403	CHEV_1_194483723	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233855626					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192342149 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			574 bp proximal
Rr426373	regulatory region 426373			1723 bp proximal