rs233857271 SNP Detail

Summary

• ID
  rs233857271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56265230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATATCCT ATGTTGCCCT
  GTAGTTTTTC AATTGTAGGA CCTGCTCCTT CATATTCCAG CAGTTCATCA GTGGGGTAGA
  TGTTGGAATG AGCCAATTCA AAGCCCTGGA TCTGGGCCTG AAAGGTTTCC TAGCTGTTTA
  GCCTGCTGAG TCTCTCGTGC CTTTGGAGTT AGCTCACCAG CAAATCCTCC AGCCGGGGCC
  R
  GTTCTATCCC ACTGGCCAGG TGAGGTGCAG GGCCTGCCCT CCCGAGTGCT GCAGCAGGTG
  AGGGGCAGGG AGAGCTTTCT TGTTCTGATG ACCCCAAGGC CAGGGCTTCC ATCTGCCCTG
  GTGGTGAAGG ATAGAGGGTA AGAGGGTAGG AGGTTGTCTC TCTCCCTCAT CCATGCCACC
  ACATAGAAGA TGAGCAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325856831	CHEV_19_56351288	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233857271					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56265230 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	720 bp downstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	554 bp proximal
Rr549994	regulatory region 549994	784 bp proximal
Rr549995	regulatory region 549995	1204 bp proximal
Rr549996	regulatory region 549996	1230 bp proximal
Rr549997	regulatory region 549997	1294 bp proximal