rs233859318 SNP Detail

Summary

• ID
  rs233859318
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATGATT GTAAGCCACT
  GTGTAGTTGC TGGGAATTGA ACTTAGGACC TTTGGAAGAG GTTATTGCAG AGAATCTGCG
  TTGAGGTTCT AGCAAGGGGA AGGGGTTGGT TGGTGGCTTA CAGCTACTCA CAACTCTAGT
  TGTGTTCCTA ACCGCTGAGC CATCTCTCCA GTACCAGCAT AGGAGTCTTC ATAATTAGCT
  M
  CTGGCCCTGC TTAGAGATCT ATCCTTTCTT TTGATAATGC CATTTAACCA CCAAATTCTT
  TCTTTAAATG TACTAGTCTT GCTCTCATTC ACCTTAAGCC CTCTACATGA ACTGTTCACT
  CCACCAGAAG AGCTCTCCCT ACAAAACCCC AAATAATAGT TGGCTGCCTG AATTCTTCAA
  GTTTCCACTC CAACTTGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388618	CHEV_7_116076916	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233859318					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	864 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	468 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	1013 bp upstream
Rr400539	regulatory region 400539	755 bp upstream
Rr652951	regulatory region 652951	699 bp distal
Rr652952	regulatory region 652952	525 bp proximal
Rr652953	regulatory region 652953	745 bp proximal
Tssr68456	transcription start site region 68456	1003 bp upstream
Tssr68457	transcription start site region 68457	1115 bp upstream