rs233870663 SNP Detail

Summary

• ID
  rs233870663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35932170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGAAT AAACAGTACT
  TGAGACAATA ATGACACAGG TTGGAGTTTT AGAGGGTGAA GAGAAAAATG GAAGATAAGA
  AATGGGAAAA AAAGCAGTTG GGGAATAAAC TCAGATAGTT TTAGATATGT AGATTTCTCC
  TGCTAACTAA GCCTTTGGTG AGATGTCCCT GTGTCTGAGA GGTTTATTTT TATTTTATCG
  Y
  CCCCCCCCCC CAAGGCTGTT TTCTGGTAGA GCGGGTTTGC TGTTGACATC TGAGTGAGAC
  AGAGAGCTGA GGAGTGTTTT GGATGTTTAG AAGTCCTCTC AGGTAAGGGA TTGCTGGCTC
  TGGGGCTGCG GATAAGCTTG GAGCGGAGGC TGGCTGGGGC CTTACCTTGT ACCACTGTAT
  AGGAGGCCTC CACGGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
ss382995612	MGP_WTSI_11_35854845	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	T	C	C	C	T	T	T	T	T	T	C	C	T	C	C	T	C	C	T	T	T	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
rs233870663					SNP	T	T	C	C	T	C	C	C	T	T	T	T	T	T	C	C	T	C	C	T	C	C	T	T	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382995612	MGP_WTSI_11_35854845	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35932170 () rs orientation: forward

Symbol	Name	Function Class
D11Mit108	DNA segment, Chr 11, Massachusetts Institute of Technology 108	437 bp proximal
Rr240121	regulatory region 240121	570 bp distal
Rr243857	regulatory region 243857	155 bp distal
Tenm2	teneurin transmembrane protein 2	within coordinates