rs233877538 SNP Detail

Summary

• ID
  rs233877538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62723811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCACTTT ATAGGAAATG
  GAAATACAGT AAGAGAGAAA TTCCTGCCAT GAGGTTCAGG CTTGACTTTA ACTAGGCATA
  TCCCAAGGTA AGATAGCTTT CTCTTCTTCC AGAAGTCTGC CCTTAGACAA GGAAATCTAC
  TGCTTCAGGT GGAAGGGAGA AAACTGGCTT GTGGCTTTAC ACTCCACTCC CCCAATTCCA
  Y
  ACCTGAACTG TGGTATATAA ATGTCCCTCG ATAGCCTAGC AGATGCCTTT AATCCCAGGA
  CTTGGGGGGC AGAGGCAAGT GGATTTCTGA ATTATAGGCC AGTCTGGTTT ACAAAGTGAG
  TTCTAGGACA GCCAGGGCTA TACAGAGAAA TCCTGTCTCA AAAAAACAAA ACAAAATAAA
  ACAAATAAAT GTCCCTAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323332088	CHEV_10_62350780	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233877538					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62723811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	474 bp distal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	30 bp downstream
Tet1	tet methylcytosine dioxygenase 1	569 bp upstream
Tssr97890	transcription start site region 97890	592 bp upstream
Tssr97891	transcription start site region 97891	559 bp upstream