rs233879383 SNP Detail

Summary

• ID
  rs233879383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26386968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATGGGG TAGGGTTGGT
  GGAAAAGGTG AGGGCAGGTA GAAGCCAGCA GGAAGTTATC AGCAGTCCCT AGGACTGAGG
  TAAATGCCAT GCCTAGTAGA CTCAAGAGGC CCCCTTACCT TCTCTCTAAG CCCCCGTTGT
  ACCTGCTCTG CAACCAGAAA TACTTCTTGG TGCCTAGCGT TCAGCCTAAG GATGGCAGAA
  Y
  GTTAAACAGT TCTTCACTCT CCCTCCCCTT GTTCCAAACC AGGATCAAAA GAATGTGAAT
  AATGGTCTCT GTGCTCATCA GCTCTGGAAC ATTTCGCTGT GTTGAGGAGA AGAAGATGAA
  AACCAAGCTT TGAGACGCAC GTAAATGTAT CATAAGCTAC CCGACCGATA TATAAACATA
  TATAGGTTCT TTGCATGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357321350	MGP_WTSI_3_26231741	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233879383					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357321350	MGP_WTSI_3_26231741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26386968 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Nlgn1	neuroligin 1	mRNA-UTR
Rr574316	regulatory region 574316	1591 bp distal
Rr574317	regulatory region 574317	570 bp distal
Rr574318	regulatory region 574318	1005 bp distal
Rr574319	regulatory region 574319	899 bp distal
Rr574320	regulatory region 574320	within coordinates
Rr574321	regulatory region 574321	1132 bp proximal
Tssr32829	transcription start site region 32829	1765 bp upstream
Tssr32830	transcription start site region 32830	1305 bp upstream
Tssr32831	transcription start site region 32831	999 bp upstream
Tssr32832	transcription start site region 32832	970 bp upstream
Tssr32833	transcription start site region 32833	918 bp upstream
Tssr32834	transcription start site region 32834	902 bp upstream
Tssr32835	transcription start site region 32835	876 bp upstream