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rs233883324 SNP Detail
Summary
  • ID
    rs233883324
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44147953 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CCCATGGTAA GCTTGCTGTT GGGAGAGGCA GAGATGGGCC
    ATCCTTGGAG CTTGCTGGTC AGCGAGTTTA TCCAATCATT TGGCTCCAGG TTAAGTGGAA
    R
    TCTCTCTCCA AAAATGAGGT AGGAGAATGA TAGGAGAAGG AAGACCTTTA ACACTAACCT
    ATGACCACCA CATGCAATGC ACACACACAC ATGCAAGTC                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156575 MGP_WTSI_7_51753899 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G A A A G A A G G G G G A G G G G A G A G G G G G A G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233883324 SNP G G G G G G G G G G G G G G G G G G G A G G A A A G A A G G G G G A G G G G A G A G G G G G A G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss371156575 MGP_WTSI_7_51753899 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44147953 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4921540A03Rik RIKEN cDNA 4921540A03 gene 806 bp upstream
Cpgi18969 CpG island 18969 1375 bp distal
Cpgi18970 CpG island 18970 1510 bp proximal
Emc10 ER membrane protein complex subunit 10 2000 bp upstream
Garin5a golgi associated RAB2 interactor 5A within coordinates
Rr380742 regulatory region 380742 454 bp downstream
Rr646108 regulatory region 646108 1861 bp distal
Rr646109 regulatory region 646109 1595 bp distal
Rr646110 regulatory region 646110 1547 bp distal
Tssr66386 transcription start site region 66386 1942 bp downstream
Tssr66387 transcription start site region 66387 1929 bp downstream
Tssr66388 transcription start site region 66388 1852 bp downstream
Tssr66389 transcription start site region 66389 1825 bp downstream
Tssr66390 transcription start site region 66390 1819 bp downstream
Tssr66391 transcription start site region 66391 1276 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory