rs233888534 SNP Detail

Summary

• ID
  rs233888534
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87842404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACCCTAT GAATCATCTA
  TTATATAATG AGCTATGTAT GTATTCTTTC AATCTAGAGC TCTTGTTTCC TCTGTTATTG
  TCACCATATA TACATTTTGA GGGGAATTAA AGGGAAGAAA ATTTGAACTT ACAGAAACGG
  AATGTTGTGG AGTGGCAGGG AATTGGACGG TGGGGTTAAG AAGTTCTAGG TACTGCAGAA
  S
  GTCTTGGACA GACATATCTT GTGGAAGGAA GGGTGCTACT TGCTGCAGAA AGTACAGAAC
  TTTGGACTGA GGAAGAGACA GCTGGGTCTG AGAAGAAACC AGGTGAGTCT GAGGAAAAGC
  CTGAACAACC TGTGCCAGGA GCTGGACCAG AGACTGAGGA AGGTGCAGAT TAGCAAGACT
  GGCAAGGCTG GGGATTTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777283	MGP_WTSI_5_88123570	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233888534					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777283	MGP_WTSI_5_88123570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87842404 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	567 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	527 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	370 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	682 bp distal
Tssr1529	transcription start site region 1529	9 bp upstream
Tssr46883	transcription start site region 46883	34 bp downstream
Tssr46884	transcription start site region 46884	19 bp downstream
Tssr46885	transcription start site region 46885	within coordinates
Tssr46886	transcription start site region 46886	25 bp upstream
Tssr46887	transcription start site region 46887	42 bp upstream
Tssr46888	transcription start site region 46888	111 bp upstream
Tssr46889	transcription start site region 46889	160 bp upstream
Tssr46890	transcription start site region 46890	175 bp upstream
Tssr46891	transcription start site region 46891	219 bp upstream
Tssr46892	transcription start site region 46892	223 bp upstream
Tssr46893	transcription start site region 46893	251 bp upstream
Tssr46894	transcription start site region 46894	298 bp upstream
Tssr46895	transcription start site region 46895	321 bp upstream
Tssr46896	transcription start site region 46896	416 bp upstream
Tssr51613	transcription start site region 51613	1866 bp upstream
Tssr51614	transcription start site region 51614	1803 bp upstream
Tssr51615	transcription start site region 51615	1747 bp upstream
Tssr51616	transcription start site region 51616	1713 bp upstream
Tssr51617	transcription start site region 51617	1704 bp upstream
Tssr51618	transcription start site region 51618	5 bp upstream
Tssr51619	transcription start site region 51619	23 bp downstream
Tssr51620	transcription start site region 51620	32 bp downstream
Tssr51621	transcription start site region 51621	41 bp downstream
Tssr51622	transcription start site region 51622	79 bp downstream
Tssr51623	transcription start site region 51623	104 bp downstream
Tssr51624	transcription start site region 51624	122 bp downstream
Tssr51625	transcription start site region 51625	128 bp downstream
Tssr51626	transcription start site region 51626	138 bp downstream
Tssr51627	transcription start site region 51627	153 bp downstream
Tssr51628	transcription start site region 51628	194 bp downstream
Tssr51629	transcription start site region 51629	286 bp downstream
Tssr51630	transcription start site region 51630	380 bp downstream
Tssr51631	transcription start site region 51631	429 bp downstream
Tssr51632	transcription start site region 51632	723 bp downstream
Tssr51633	transcription start site region 51633	1508 bp downstream
Tssr51634	transcription start site region 51634	1630 bp downstream