rs233893601 SNP Detail

Summary

• ID
  rs233893601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75062052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTTAAA TGTTTTCTCC
  TTTTAATGGG GTTAGATCGT GCGAGTCTGG AGAGAAAGCT CTGTATGTGT TTTACACAAT
  GGAGTTTATC CGCTGGTTGA CCCATAAGGA GGTCGGCTGG GTCTTCAGTT CCTTCTTGTT
  CTATCCCTCT CCACCGACTC AAGCCCTTGT TGTATCGCTA TGGGGCCAAC CACATAAACC
  Y
  TGCCCAAGTT TCACTGTGTA CTCCCCTCCC CTCCCCTCCC CTTCTCTCCT CTCCTCTCCT
  CCACGCCCCA CCACCACCAC CACCACAGTT TCAAGTCTAC GGCTAGCCTC GAACTCACAA
  AGGCGTCTAC TTCCCACGTA CAAGGATGCG CACCACCATG CCCCTCCTCT TAACTTTGCT
  TTCCCCTTCT TCCTGAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323750378	CHEV_11_74984728	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233893601					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75062052 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	782 bp upstream
Cpgi3251	CpG island 3251	1813 bp distal
Cpgi3252	CpG island 3252	303 bp distal
Cpgi3253	CpG island 3253	107 bp proximal
Cpgi3254	CpG island 3254	850 bp proximal
Hic1	hypermethylated in cancer 1	1707 bp upstream
Rr402719	regulatory region 402719	1772 bp upstream
Rr451074	regulatory region 451074	1994 bp distal
Rr451075	regulatory region 451075	1952 bp distal
Rr451076	regulatory region 451076	1217 bp distal
Rr451077	regulatory region 451077	555 bp distal
Rr451078	regulatory region 451078	759 bp proximal
Rr451079	regulatory region 451079	1987 bp proximal
Tssr102928	transcription start site region 102928	1218 bp upstream
Tssr102929	transcription start site region 102929	1245 bp upstream
Tssr102930	transcription start site region 102930	1327 bp upstream