rs233901040 SNP Detail

Summary

• ID
  rs233901040
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29577829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCACAC ATAGGTGGGG
  AATGAACTCT GGTGTGGACT GAGAGGGCTC ATGGGGGTGA ATTATTCTAT TCTGTCTACC
  CTCGTGTATG TTCTTCATTT TTTTATGACA AAAAGTGCAA GGGGATCTAA GGTATGTTCT
  TCATTTTTTT ATGACAAAAA GTGCAAGGGG ATCTAAGGAC GATGCTCAGT TGGTAGAGAG
  S
  CTGGCCGGCT CTGCATCCTC AGCATGGCAT AAAACTAGCA TTGTGGGGCT GGAGAGATGG
  CTCAGCAGTT AAGAGCACTT GCTCCTCTTG CAGAGGCCCT GCATTTGGGA TTAGTGAGAC
  TTAGTCCTCA GGACTGGGCT GGCCTCTGGT GGCAAACACA GCTGGGGGGT GGGGGAGCTC
  AGAGGTGCAG GGTTGCTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325353626	CHEV_17_29495800	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233901040					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29577829 () rs orientation: forward

Symbol	Name	Function Class
Rr1771	regulatory region 1771	977 bp distal
Rr405148	regulatory region 405148	1875 bp upstream
Rr524884	regulatory region 524884	1321 bp distal
Rr524885	regulatory region 524885	1870 bp proximal