rs233902541 SNP Detail

Summary

• ID
  rs233902541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95859630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAAAACA GGAAGACAGC
  AGGGCTTGGT GGCGCACGCC TTTAATCCCA GCACTTGGGA GGCAGAGGTA GGCGATTTTC
  TGAGTTCGAG GCCAGCCTGG TCTACAAAGT AAGTTCCAGG ACAGAGAAAT CCTGCTTCGA
  AAAAACAAAC AAACAAAAAA CACGAAGGCT CTTTCTTTAC CGAACGAGTG ATTCCAACAG
  R
  GAGACTTTGT AAAGGTCCAT TACAGAGAGA GTTAGGACTT ATTTTTCCGT CTTTTAGTCA
  ATCACAGCTG AAGGTAGTTT GTCAAAAGTA TCAAAGTAAA ATCATCCTTA AATCCTTTTT
  ATTAGAACCA ACGAACCACT TTAGAATGTT TGCATCAGTT TGTTTTGTAC AGTAGAAGTT
  TCTTTGGAGG TCTGAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358910658	MGP_WTSI_3_95756241	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233902541					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358910658	MGP_WTSI_3_95756241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95859630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	828 bp distal
Gm56819	predicted gene, 56819	1027 bp upstream
Gm65572	predicted gene, 65572	632 bp downstream
Rr375411	regulatory region 375411	430 bp downstream
Rr581095	regulatory region 581095	1038 bp distal
Rr581096	regulatory region 581096	980 bp distal
Rr581097	regulatory region 581097	334 bp distal
Rr581098	regulatory region 581098	780 bp proximal
Rr581099	regulatory region 581099	1811 bp proximal
Tssr30663	transcription start site region 30663	1232 bp downstream
Tssr30664	transcription start site region 30664	951 bp downstream
Tssr34570	transcription start site region 34570	1282 bp upstream