rs233902566 SNP Detail

Summary

• ID
  rs233902566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142208024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCATGTTA GCCTGAGCTC
  CCATCTAGGT GTCGCATATC CCCAGCCCCA CTAGAGTCAC CCCACCTCAG GGCAACTTCC
  CTGAAATATC TATGTTAATG AGCAGAGGCT GACAGTAAAA TGTGTGAGGG GGGCTTCGTG
  GTACCCCAAA TCAAGAAGTG AGTGGTCTCT TTGTCTCACC CCATAATTCC TTCAACCCCA
  Y
  CTCGCTACCT ACCGGAAGTA CGGCCTGAGA GGTAGACACG TCCCTCTCGG ACTTGGCGGG
  GGTGGCACAG TATGTCTCCA GGAGGGCCAG GTCGCAGCTG CGGAAGCAGC ACTCTTCCAC
  GATGCCACGG CTGCGACGGT TGGCACGGCT TGAAGGCCTG CCTGGAAGTT CCACAGGACA
  GACAACTTCA GTTAGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454566	MGP_WTSI_7_149840192	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233902566					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454566	MGP_WTSI_7_149840192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142208024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	within coordinates
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	1192 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	637 bp downstream
Rr167001	regulatory region 167001	within coordinates
Tssr2462	transcription start site region 2462	1230 bp downstream
Tssr2463	transcription start site region 2463	434 bp upstream
Tssr70229	transcription start site region 70229	1270 bp downstream
Tssr70230	transcription start site region 70230	1177 bp downstream
Tssr70231	transcription start site region 70231	722 bp downstream
Tssr70232	transcription start site region 70232	669 bp downstream
Tssr70233	transcription start site region 70233	626 bp downstream
Tssr70234	transcription start site region 70234	588 bp downstream
Tssr70235	transcription start site region 70235	565 bp downstream
Tssr70236	transcription start site region 70236	543 bp downstream
Tssr70237	transcription start site region 70237	442 bp downstream
Tssr70238	transcription start site region 70238	412 bp downstream
Tssr70239	transcription start site region 70239	282 bp downstream
Tssr70240	transcription start site region 70240	26 bp upstream
Tssr75858	transcription start site region 75858	1969 bp upstream
Tssr75859	transcription start site region 75859	1913 bp upstream
Tssr75860	transcription start site region 75860	1858 bp upstream
Tssr75861	transcription start site region 75861	1826 bp upstream
Tssr75862	transcription start site region 75862	1279 bp upstream
Tssr75863	transcription start site region 75863	1248 bp upstream
Tssr75864	transcription start site region 75864	1219 bp upstream
Tssr75865	transcription start site region 75865	1186 bp upstream
Tssr75866	transcription start site region 75866	1139 bp upstream
Tssr75867	transcription start site region 75867	1106 bp upstream
Tssr75868	transcription start site region 75868	1087 bp upstream
Tssr75869	transcription start site region 75869	1065 bp upstream
Tssr75870	transcription start site region 75870	1052 bp upstream
Tssr75871	transcription start site region 75871	1008 bp upstream
Tssr75872	transcription start site region 75872	600 bp upstream
Tssr75873	transcription start site region 75873	588 bp upstream
Tssr75874	transcription start site region 75874	378 bp upstream
Tssr75875	transcription start site region 75875	341 bp upstream
Tssr75876	transcription start site region 75876	293 bp upstream
Tssr75877	transcription start site region 75877	234 bp upstream
Tssr75878	transcription start site region 75878	31 bp downstream
Tssr75879	transcription start site region 75879	53 bp downstream
Tssr75880	transcription start site region 75880	103 bp downstream
Tssr75881	transcription start site region 75881	1397 bp downstream
Tssr75882	transcription start site region 75882	1438 bp downstream
Tssr75883	transcription start site region 75883	1749 bp downstream
Tssr75884	transcription start site region 75884	1787 bp downstream
Tssr75885	transcription start site region 75885	1834 bp downstream
Tssr75886	transcription start site region 75886	1892 bp downstream