rs233909233 SNP Detail

Summary

• ID
  rs233909233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTCGCACT TCTCTTTTGT GTTTGAGAGA TTACTTTTAC
  TTTAAGAGCC TGGGTTCCAC TTCTAAAACT AATAAAGAGA AGCATCATTC ACTCTCTGTT
  K
  TCTCTTCTGG AGCCCAAATG GCACCGCTGA AGGCCAGCCA CGGGTCAGGC GCTCACACAT
  CTGTCACTTG ATCTCACAGG ACAGACATAG AGCTACGCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584148	CHEV_2_156922693	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233909233					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938877 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1280 bp distal
Rr568432	regulatory region 568432	1723 bp distal
Samhd1	SAM domain and HD domain, 1	577 bp downstream
Tldc2	TBC/LysM associated domain containing 2	475 bp downstream
Tssr27104	transcription start site region 27104	1501 bp downstream
Tssr27105	transcription start site region 27105	1546 bp downstream
Tssr27106	transcription start site region 27106	1635 bp downstream
Tssr27107	transcription start site region 27107	1779 bp downstream
Tssr27108	transcription start site region 27108	1905 bp downstream
Tssr27109	transcription start site region 27109	1977 bp downstream