rs233920722 SNP Detail

Summary

• ID
  rs233920722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105572385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTTCCCA TTAGCAGCAC
  CCAGATTTCC TGCTGGTCCA ACTGCTGGTC CTCTAAGATG AAATGAAGGA TGTGGCAGTC
  CCAGAATTCC TGGTGCTGAG TTTGTAGAGT GACGCAGCAT GAATGGATCA CCCATTGTGT
  GTCCAGTATC ACTGTCAGGA TTCCATTCTG GGTAGATTTC AAGAAGAAGC TGGCATCGAC
  R
  ACTGTGACTT GCTCCACTGG TATATTGACT CCACTCCTTA TTAGAATGAA CTGGCATATC
  ACATATAGAG CACAAATGGG GATAACCCTT CAGTAAGAGT CCGTGTAACT GTTTAATATT
  GCTACTTAGA AGAGTGCCCC TATTTTTCTC AATTTTACCT GTGTTTCTCT CCATAGTACC
  TCCATGGTAT TCCCTATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ
ss375902301	MGP_WTSI_8_107369653	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ
rs233920722					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375902301	MGP_WTSI_8_107369653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105572385 () rs orientation: forward

Symbol	Name	Function Class
Ces2c	carboxylesterase 2C	1315 bp upstream
Gm33715	predicted gene, 33715	within coordinates
Matr3-ps2	matrin 3, pseudogene 2	within coordinates
Rr668766	regulatory region 668766	969 bp proximal
Tssr79079	transcription start site region 79079	1308 bp upstream