rs233931441 SNP Detail

Summary

• ID
  rs233931441
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12275858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCGGGAT ACGAGTGGGG
  GTTTCCCCTC TAGGTTCTTT CAGGATATTG ACCTCCTTTG CTGTTCATGG TGGCTCCAAC
  ATAACACCTT TTCTTTCTTT TTTTTTTGTT TTTTGTTTTT TGAGACAGGG TTTCTCAGTG
  TAGCCCCGGC TGTCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAGTCC
  K
  CCTGCCTCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG CATGCACCAC CACGCCCGGC
  ATAACACTTT TTAATATAGA ATTTTAGTAT ATAGTACAGT TTGGCTTTGA ATTAGCCTCC
  TGTGTCTCAC CAAGACCTGC AAAACACAAC ATTTCTTTTT TCAGATTTTA AAAACAAAGG
  ATAGTTCAGT AAGGTCAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss387753875	MGP_WTSI_13_12353239	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs233931441					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387753875	MGP_WTSI_13_12353239	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12275858 () rs orientation: forward

Symbol	Name	Function Class
Gm47021	predicted gene, 47021	702 bp upstream
Rr270765	regulatory region 270765	543 bp proximal
Rr270766	regulatory region 270766	1543 bp proximal
Rr387989	regulatory region 387989	within coordinates
Tssr121434	transcription start site region 121434	768 bp upstream