rs233939162 SNP Detail

Summary

• ID
  rs233939162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83985838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAATCATC CATCCTCGGT GGATCTCTGT
  GGGATCAAGT TAGCCAAGGC TCTCATACCT CAGGGCTTAG ACCTTTTTGT CCATCTCCCG
  CTACGACCAA TGCCTAGCAG ATAAGTATGT TTCAGAAAAG TCAATGGTGG CATAGACTAT
  Y
  CCTTCCTGGG CCTCAAGAGT GGATGGTTAA TAGATTTAAT CTGTCTTGTC TCTAATATAT
  TCCTGATctc cctccctccc tccctccctc cctccctccc tccctccctc cctccctccc
  tctctctccc cACTTTCTCA CACACAAATA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324114780	CHEV_12_85280014	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233939162					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83985838 () rs orientation: forward

Symbol	Name	Function Class
Gm60490	predicted gene, 60490	1198 bp upstream
Gm60518	predicted gene, 60518	within coordinates
Rr469522	regulatory region 469522	1746 bp distal
Rr469523	regulatory region 469523	1284 bp distal
Rr469524	regulatory region 469524	1003 bp proximal