rs233940074 SNP Detail

Summary

• ID
  rs233940074
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84574015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACACAC ATAGGAATGT
  ATTTCATTTT CTCCAGGGTC AAATTTCTTC ATAGATTATT TCGGGCTTGT ATGCACCGGA
  AATATGTCTT CTCAAACTTA CTTACACACT TGTTTTAGGA TCTTATTTAA TCACTTATTT
  TAATATCAGC CTGGGCTTAT TAATAAATAT ATAACTAATA TGTATTTAGT TGATGATAGA
  M
  TCGTATTTTT TATTTATTAA AGAACTAGAG CATTCCTTAT GCTGAAATTG CATCCTCGTA
  CTTTTAATAT TCCTCTCAGA TACAGCTACA CTGCTGCTTT GTCCCAACCC AACCATGTGT
  ACTTATAATA TCTTACTTAC CACATTCTTC CTACATCTGC CAGTTTCTAA TGTCGCTCAC
  AGAAAGTAGT CTAGGAAATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261879	CHEV_16_84777372	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233940074					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84574015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1895 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Rr392068	regulatory region 392068	1054 bp upstream
Rr518534	regulatory region 518534	1765 bp distal