rs233949820 SNP Detail

Summary

• ID
  rs233949820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157405823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCTGCT GCTAAGGCCT
  GAAGTCAGGT CAGGTCCTGT GCCTGCCCCG TAGTTACTCA TCTGCAGTCA GTGGCTACCT
  CCTTTATGGT TAGAAACTTC TGTGGTTTGC CATACTAAAC TCATTGAACC TTGAGTACAT
  ATACAACACA GGTTCCAAAG GAAGGTTGAC TCTCCCCTTG GAGATCTGGA GTGGGGGGCC
  Y
  GATGTCACTC TATTGTTCCA TGTTCTAACG TCAGCCCAAA TTAGATGCCA GCTGAGTACA
  CAAAAGCCAA ACCAGGGAGA AAGGAGTCTG GCTACTCTGG TCATAGCATA TCCTGTGCCC
  ATCCCTAAGC CAGGAGGCTA CTACTGGTAA CTCCAGGGCT TTCCAGATGA TCTTGGTAAA
  ACCTTTTTCT TCCATCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262077	MGP_WTSI_2_157389639	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233949820					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262077	MGP_WTSI_2_157389639	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157405823 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12577	CpG island 12577	1767 bp proximal
Gm56190	predicted gene, 56190	1456 bp upstream
Nnat	neuronatin	1381 bp downstream
Rr568544	regulatory region 568544	521 bp distal
Rr568545	regulatory region 568545	1629 bp proximal
Tssr721	transcription start site region 721	1446 bp upstream
Tssr21277	transcription start site region 21277	1989 bp downstream
Tssr21278	transcription start site region 21278	1956 bp downstream
Tssr21279	transcription start site region 21279	1871 bp downstream
Tssr21280	transcription start site region 21280	1759 bp downstream
Tssr21281	transcription start site region 21281	1685 bp downstream
Tssr21282	transcription start site region 21282	1612 bp downstream
Tssr21283	transcription start site region 21283	1583 bp downstream
Tssr27186	transcription start site region 27186	1889 bp upstream