rs233955027 SNP Detail

Summary

• ID
  rs233955027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101831764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCCAAG GGGATCACAG
  CCAGAAAGGC TGTATATCTC AGTCAGTTAA TGACAGAACA AAAACAAGAA GTAAAGGATC
  TGCAATCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGCAT GCAGGAAACA CAAATTCTCT TCCTGGTGTC TCTCTGAGAC
  Y
  CAATTTTGCC CAGCTGCAGC AAACTCAAGC TAATCAATTG CAGCCGAACT CAGTAATTAC
  AGATGTGAAC GTGAACCCTT CTGGATTTTC TTGTCTTTCC TCTCAGAGCA GCTCTGTAGT
  TCCAGGTCCT TCTGGGCACA GGGGAAGGAG CAGAAAGATG AGGTGAGCCA GCCATGGTCA
  CAGCCATCTG TCTTCCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323834288	CHEV_11_101802252	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233955027					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101831764 () rs orientation: forward

Symbol	Name	Function Class
D11Mit146	DNA segment, Chr 11, Massachusetts Institute of Technology 146	1500 bp proximal
D11Mit332	DNA Segment, Chr 11, Massachusetts Institute of Technology 332	22 bp distal
Gm74450	predicted gene, 74450	988 bp downstream
Rpl27-ps2	ribosomal protein L27, pseudogene 2	1039 bp downstream