rs233955285 SNP Detail

Summary

• ID
  rs233955285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32186971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aatccatag ccactatggc tcaagatctt
  caaaccaaga tccagataag gatctccaag cctccagata agggtcactg gtgagccttc
  caattccgga ttgtagttca ttccaaatat tgtcaagttg acaaccagga atagccacta
  Y
  aATGTCCCTG GCTTAATTCA CACTCTCAAC CATGGGTCAG TTTTAAAATG ACCCTGTTAT
  TGCCTATGCC ACCAGAATGC CGAGTGCCTG CCTATCTGGT ACACACTAAC TCCACTTCCG
  ATAGCATCTC TGTCGGTTTG TATATTTCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325792074	CHEV_19_32284061	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233955285					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32186971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10757	CpG island 10757	1085 bp proximal
Gm50210	predicted gene, 50210	298 bp upstream
Rr546425	regulatory region 546425	436 bp proximal
Rr546426	regulatory region 546426	1432 bp proximal
Sgms1	sphingomyelin synthase 1	within coordinates
Tssr158859	transcription start site region 158859	562 bp downstream
Tssr158860	transcription start site region 158860	1398 bp downstream
Tssr158861	transcription start site region 158861	1445 bp downstream