rs233957840 SNP Detail

Summary

• ID
  rs233957840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8474422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTCGGG CTCGCAGCTC
  TGCCTCAGCG CGCCGGCTCC CGCGGGCTCC GGAGGCGCGG CGGCGGCGGC GACAGCGGCG
  GAGGCAGCGG GAGCAGCAGC GGCGGTTCTG CTCCGTGCCC TTGTCCTGTG CAACGGACGG
  CCGTGGATGC TGCCCGTGGG GTCGCTTCTG CAAGACGGCG TCTACGCCGT TGCTCGGGTG
  R
  CCGGCTTGAT TTTTTTTTTT TTTTTTTCCT TTTGGTCCCC CTCGAGGCGA CAGCAGCCGG
  GCGCTGGTCC GCTGTGGTGG CGTGAGGCCG GGATCTCCCT CTTCTCAGGC GCTCCGGGCC
  TCATAGCCCC CCACCCTCAA TCCCGGAGAA GGCGGCCAGC CGAGGCCGCG CTGCTCTCCC
  TGACTGGCCG GCCCCGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392965642	MGP_WTSI_15_8394938	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233957840					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392965642	MGP_WTSI_15_8394938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8474422 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	within coordinates
Cpgi6934	CpG island 6934	1043 bp proximal
Gm63261	predicted gene, 63261	388 bp upstream
Nipbl	NIPBL cohesin loading factor	475 bp upstream
Rr369900	regulatory region 369900	within coordinates
Rr499034	regulatory region 499034	486 bp distal
Rr499035	regulatory region 499035	within coordinates
Rr499036	regulatory region 499036	399 bp proximal
Rr499037	regulatory region 499037	516 bp proximal
Rr499038	regulatory region 499038	1598 bp proximal
Tssr4546	transcription start site region 4546	61 bp upstream
Tssr130591	transcription start site region 130591	1302 bp downstream
Tssr130592	transcription start site region 130592	189 bp downstream
Tssr130593	transcription start site region 130593	27 bp upstream
Tssr130594	transcription start site region 130594	472 bp upstream
Tssr130595	transcription start site region 130595	627 bp upstream
Tssr130596	transcription start site region 130596	1250 bp upstream
Tssr133664	transcription start site region 133664	729 bp upstream
Tssr133665	transcription start site region 133665	692 bp upstream
Tssr133666	transcription start site region 133666	490 bp upstream
Tssr133667	transcription start site region 133667	432 bp upstream
Tssr133668	transcription start site region 133668	270 bp upstream