rs233964859 SNP Detail

Summary

• ID
  rs233964859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148892332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT GAGGTGTGGG GGAAGGGCTG
  Y
  CTTAGCGGCC CATGCTGAGG CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321719749	CHEV_5_149767098	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233964859					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148892332 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	348 bp upstream
Gm52833	predicted gene, 52833	272 bp upstream
Rr378799	regulatory region 378799	1241 bp upstream
Rr625339	regulatory region 625339	1680 bp distal
Rr625340	regulatory region 625340	894 bp distal
Rr625341	regulatory region 625341	789 bp distal
Rr625342	regulatory region 625342	648 bp proximal
Rr625343	regulatory region 625343	1283 bp proximal
Tssr54595	transcription start site region 54595	235 bp downstream