rs233965918 SNP Detail

Summary

• ID
  rs233965918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATGTAG TATGCCCTCA
  ATAAATAGAT AAGTTAGAGT GACTTCAATA GCTCAACACT AAATTACCAG AGCATCAGTG
  GCTAGGGTGG GGTGCAGGAG TTCTAGATTA GATAGGGCAG CATAGGGACA CTACTTCTCT
  TTCTTTAAAA GGAGAAAAAT ATTCGAATAT TATCAGCTAT ATCATCTAAT AGAATTCCAC
  R
  TTACTCCTAT ACTTCGCTTT AAAAATATCC CTGGCGTTCA GCCCTTTCTT TTAAGTTCTG
  CGATTGAACA TTCTGAGTAC ACCCTTTCTA GTCCTGAAGT CAAAATGTCA CCAGCCTTAA
  AGCTTTTCTG AAACCATTGG CCGATGTCTA AGTCTCACTC TGGCTCACTT CGCAGGACCT
  TTCCTTCTGT CCCCGCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050326	CHEV_12_58330985	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233965918					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	51 bp proximal
Mipol1	mirror-image polydactyly 1	429 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	414 bp upstream
Rr265473	regulatory region 265473	within coordinates
Rr403305	regulatory region 403305	379 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	408 bp upstream
Tssr113520	transcription start site region 113520	467 bp upstream
Tssr113521	transcription start site region 113521	516 bp upstream