rs233974760 SNP Detail

Summary

• ID
  rs233974760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58277564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCCTAC AGGGGTGAAT
  CTCAGGAGCT GTGCATAGGA AAGCTTTGGG CAAAGCATGT GTCTTTAGGG CTAGATCTGA
  GGTTCCTGGA ATGTAGACTT TCCGGCAGCT TTTCTGCGTG CTTGTTCCTG CCTCTCAGGA
  CAGTGTGATA ACGTGAATCT AAGTAACGGC TTTCCTCTAC CCAGAATCCG GAACACAGAA
  Y
  GTAACTGACA TGCAGTGCAT GTCTTGCTAT GGTCACAACA AAACACTCTG CGAGGAGAAA
  CCCCAAAAGT GTTACGAAGG AGAACAATGT GTCTTCATCA TTGCGGAGAT GGTAAATGGT
  AAGACTGGAG CTTCAGCTAC TTAAATGGGC TCAAATTGAA ACGAGATTCA AGTTGCTGTG
  CTGCAGCAGA AGAGCTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690055	CHEV_11_58200240	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233974760					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58277564 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101738	transcription start site region 101738	1992 bp downstream
Tssr101739	transcription start site region 101739	within coordinates
Tssr101740	transcription start site region 101740	49 bp upstream
Tssr101741	transcription start site region 101741	77 bp upstream
Tssr108157	transcription start site region 108157	32 bp downstream
Tssr108158	transcription start site region 108158	84 bp downstream