rs233977620 SNP Detail

Summary

• ID
  rs233977620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCATCATG TGTATTTTCT
  ATAAAGTTAT AAAATATGTG ATATGTGCTA AAGCAACTTT AGTACCAAAC ATGGCAACTG
  GTTGTAGATA ATTGTGTTTT CTATCTTCAT TCCTTACTTA TACAGAACTA AACCTAACAA
  CTAAACCACA GAACTAATCT TTGCTTATAA GATTCAAAAA TATTCATAAC TCCATCCCAA
  M
  AGATGTACCT CTGTAACTCC TAGCTCAATT CAACACCACA TGAATTCATT GGGTAAACTT
  TGTGTTGCAC TAATATTGTA ATGCTCGGAG TATCAGAGTG AACACCTTCT CCATCCCAGG
  CCCACTCACA CAAGAAAGAA CACAGGCTTT TGTAGGTTGC AAGTCCTGGT CTGGTTTATT
  TATAAAGCAA TAAATATTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315495	MGP_WTSI_2_113872870	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233977620					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315495	MGP_WTSI_2_113872870	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877615 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	148 bp downstream
Rr562815	regulatory region 562815	1424 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	428 bp downstream
Tssr601	transcription start site region 601	438 bp downstream
Tssr19429	transcription start site region 19429	150 bp upstream
Tssr19430	transcription start site region 19430	245 bp upstream
Tssr19431	transcription start site region 19431	325 bp upstream
Tssr19432	transcription start site region 19432	421 bp upstream
Tssr19433	transcription start site region 19433	987 bp upstream
Tssr19434	transcription start site region 19434	1040 bp upstream
Tssr25660	transcription start site region 25660	177 bp downstream
Tssr25661	transcription start site region 25661	194 bp downstream
Tssr25662	transcription start site region 25662	251 bp downstream
Tssr25663	transcription start site region 25663	314 bp downstream
Tssr25664	transcription start site region 25664	344 bp downstream
Tssr25665	transcription start site region 25665	452 bp downstream
Tssr25666	transcription start site region 25666	1019 bp downstream
Tssr25667	transcription start site region 25667	1046 bp downstream
Tssr25668	transcription start site region 25668	1082 bp downstream
Tssr25669	transcription start site region 25669	1111 bp downstream