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rs233980925 SNP Detail
Summary
  • ID
    rs233980925
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr10:27493023 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCCACGGAG TTGCAGCCTC
    GGGTCCACCC AGCTGAAATG AGCAGCTGCA GGGGAAAGAG GAGGAGACAG TGCTCCCCAG
    CTCTGCCCTG CCACCGCCCA AGGGTGGGTG AGAAAGGGCA GTCCCCACCC CTTCCCAGGC
    CTGGGCCTTT AAAGGGTCCT TGGTTGGAAG AACCTGTGTT CTGTGCTTCC TCTGTCAAGG
    R
    AATAGGGCCT CTAGCAGGAG TTATCCAAAC TTCTTTAGCA TTAAGGAAGT AATTGATACC
    AAGGCACTCT GGGGTCTGTG AAATCCCTCC AGATGGAAAA CATTATTGCC AAGAAAGCTA
    GAAACTTTGA CTCCTCAGAA GGTTCTGGCA AAATTATATG CAGCTGCCCT GGGTCCAGGT
    GATCCCAGAC TGTCCCAAGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss379824808 MGP_WTSI_10_27336833 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233980925 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss379824808 MGP_WTSI_10_27336833 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:27493023 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi1405 CpG island 1405 183 bp distal
Gm36962 predicted gene, 36962 1699 bp upstream
Lama2 laminin, alpha 2 2 bp upstream
Rr224629 regulatory region 224629 within coordinates
Tssr97144 transcription start site region 97144 213 bp upstream
Tssr97145 transcription start site region 97145 202 bp upstream
Tssr97146 transcription start site region 97146 136 bp upstream
Tssr97147 transcription start site region 97147 123 bp upstream
Tssr97148 transcription start site region 97148 90 bp upstream
Tssr97149 transcription start site region 97149 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory