rs233981819 SNP Detail

Summary

• ID
  rs233981819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40365802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACTTTT TAAAAGTGTC
  CTATCAAGCT TAGCTTCCAC ACCCCTTCAT ACCCTGGAGA CCCCCTCAAG ATCCCCACAC
  TTGCTGGTGT CACTTTTGAG CTTTTGAGAC CCACTCAATA AGTGATAATG AACGAAAGTG
  AAATGATAGG GTGAATGAAC TCCCATTAGT TACCACCAGC AGCAATAACA GCAACACCCC
  R
  CCCCCTCTAA TAGTACAGAC CTCTGCTAAT GGTCATACCC CGAGTCCAGA AGTAAATTGA
  AGAGGGGACA TGGTATCCAT GAGTAGCGGG GACTCCATGC CACCATGGGC AACTTCCTGA
  AGCAACACAC ACACACATTA CCCTGTGAGC TTCATGCTAG TTCTTGAATG TGAACAGCAA
  ACATCTCCCT AGCAAAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377313570	MGP_WTSI_9_40262091	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233981819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313570	MGP_WTSI_9_40262091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40365802 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21594	CpG island 21594			646 bp proximal
Gramd1b	GRAM domain containing 1B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr676839	regulatory region 676839			898 bp proximal
Rr676840	regulatory region 676840			1154 bp proximal
Rr676841	regulatory region 676841			1329 bp proximal
Tssr84449	transcription start site region 84449			787 bp upstream
Tssr84450	transcription start site region 84450			1385 bp upstream
Tssr88934	transcription start site region 88934			836 bp downstream
Tssr88935	transcription start site region 88935			912 bp downstream
Tssr88936	transcription start site region 88936			937 bp downstream
Tssr88937	transcription start site region 88937			1000 bp downstream
Tssr88938	transcription start site region 88938			1268 bp downstream
Tssr88939	transcription start site region 88939			1275 bp downstream
Tssr88940	transcription start site region 88940			1331 bp downstream
Tssr88941	transcription start site region 88941			1613 bp downstream
Tssr88942	transcription start site region 88942			1631 bp downstream
Tssr88943	transcription start site region 88943			1646 bp downstream
Tssr88944	transcription start site region 88944			1689 bp downstream
Tssr88945	transcription start site region 88945			1724 bp downstream
Tssr88946	transcription start site region 88946			1806 bp downstream
Tssr88947	transcription start site region 88947			1834 bp downstream
Tssr88948	transcription start site region 88948			1881 bp downstream