rs233990080 SNP Detail

Summary

• ID
  rs233990080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24098629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGGTAA GTTTGAGGTC
  AGGCTGATGG ACTCACGGTT TTTTTTCTTT AAGAAAGGAA AAGCAATAGG GGAGGTGGAA
  CTTCTGCCTC TCAGCTGTCT TTCCATTGGG TGACTGCACC CTCTGCCCAG TGGCCTTCCA
  GCTGCTTCAG GCTGTGCCCC TAGTCCTTTG AATGTTTGCC CCTTCTGTAG CCCTGCGATC
  Y
  GCCCACTTCT GCCGCCCACC TCGTGCCACA GGTCCAAGCC TAGACCTTTC TCTACAGATG
  TTCTGTCTTG GAGGAGCTGG GCTCTTCCTT AAAGTCCTTC AAGATCGCTT CTTGCAGCCA
  GCTGAATCAG TCTTGTGCTT GCTCAGATAA GGACGTTAAT TCCTCCCTTC CGCCGTACCC
  TACCCCGATC GGTCTGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370783910	MGP_WTSI_7_25184223	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233990080					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370783910	MGP_WTSI_7_25184223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24098629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	within coordinates
Gm74022	predicted gene, 74022	within coordinates
Rr643435	regulatory region 643435	1821 bp distal
Rr643436	regulatory region 643436	955 bp distal
Rr643437	regulatory region 643437	within coordinates
Rr643438	regulatory region 643438	426 bp proximal
Rr643439	regulatory region 643439	721 bp proximal
Rr643440	regulatory region 643440	1369 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	477 bp upstream
Tssr64959	transcription start site region 64959	402 bp upstream
Tssr64960	transcription start site region 64960	470 bp upstream
Tssr64961	transcription start site region 64961	609 bp upstream
Tssr64962	transcription start site region 64962	755 bp upstream
Tssr64963	transcription start site region 64963	773 bp upstream
Tssr64964	transcription start site region 64964	809 bp upstream
Tssr71075	transcription start site region 71075	654 bp downstream