rs233990643 SNP Detail

Summary

• ID
  rs233990643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30129416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTCTGG GGTCTGAAGC
  TCCACATTGT TTGGGGGATG GTGTACAAAG CAGGGACCAG AGAAGCAATT GACAATACCT
  CCCACACCCA GGAGTCAGCC TCACATTCCT GTTCTCCATA CCTAAGGCAC ATTTGCTAGG
  ATGGAGTTTC CTTGCAAATC TGAATGGCCT TTGTGGAGGG CATGGGCTTC TGAGGGTCAG
  Y
  CTAATGGGGC AGAACCCCCG CTTGCTGCCT GGAACCAGCC TGTTCCTAGG TCACTGTCCT
  GAGACTGTAG ATTTTCCAGG TTTTTACAGA GACATTGAAG GGCAGGCTGA CCAGTGAAGA
  CCTCTTGATA ACTCAGAAGG AATAAATGCA GACATTAAAT AAATATAGAC TACAGTGGTC
  CTGAAGCAGC CCAGAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353511999	MGP_WTSI_2_30094924	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233990643					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353511999	MGP_WTSI_2_30094924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30129416 () rs orientation: forward

Symbol	Name	Function Class
1700084E18Rik	RIKEN cDNA 1700084E18 gene	1773 bp upstream
Cpgi11431	CpG island 11431	804 bp distal
Gm28035	predicted gene, 28035	1163 bp upstream
Lrrc8a	leucine rich repeat containing 8A VRAC subunit A	Intron
Rr372988	regulatory region 372988	1885 bp upstream
Rr396861	regulatory region 396861	1602 bp downstream
Rr554257	regulatory region 554257	1756 bp distal
Rr554258	regulatory region 554258	1672 bp distal
Rr554259	regulatory region 554259	1677 bp distal
Rr554260	regulatory region 554260	691 bp distal
Rr554261	regulatory region 554261	962 bp distal
Rr554262	regulatory region 554262	144 bp proximal
Tssr17097	transcription start site region 17097	1732 bp downstream
Tssr17098	transcription start site region 17098	1657 bp downstream
Tssr23362	transcription start site region 23362	1749 bp upstream