rs233990971 SNP Detail

Summary

• ID
  rs233990971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72759824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGTAT TTCTGGGATG
  CTCGCCTTCC TCCCTCATGA AGGGACTGGG GGGGAACCTC GTTGGTCCGA AAGTCAGCCA
  TGCATGCGGA CCCAGCTTAC CGAGCTTCAG CCTACTCGCA CGCCCCACCG CAACTACCAA
  ACTCTCACCA ATGCTCAGGC CCGCCCCCTA GCCCGCGGGC GGAAACCGGA AACGCGCGTC
  R
  GGCCCCGCCT ACAAGTCCTC TAGAGGCCCC TAACGGCTCC GCCCATTGTC GTTTCCCGCC
  CCGCCCTTAG GCGCGGCCTG TTGCCAAGGT CTAGAAAGGA AGTAGAGGCT GACGGTTGAA
  GGCCCCCTGC CGCGCCTCTG ACACTTCGGA CACGCAGGGG TGGAGCTTGG AGGCGCCTTG
  GCGGGAGGGC TGGGGCCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403774840	MGP_WTSI_X_70961557	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs233990971					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403774840	MGP_WTSI_X_70961557	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72759824 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	379 bp upstream
Bcap31	B cell receptor associated protein 31	43 bp upstream
Cpgi22777	CpG island 22777	within coordinates
Cpgi22778	CpG island 22778	841 bp proximal
Gm61833	predicted gene, 61833	1394 bp downstream
Rr406105	regulatory region 406105	183 bp upstream
Rr691928	regulatory region 691928	54 bp distal
Rr691929	regulatory region 691929	523 bp distal
Rr691930	regulatory region 691930	281 bp distal
Rr691931	regulatory region 691931	within coordinates
Tssr161281	transcription start site region 161281	359 bp upstream
Tssr161282	transcription start site region 161282	494 bp upstream
Tssr161283	transcription start site region 161283	535 bp upstream
Tssr161284	transcription start site region 161284	568 bp upstream
Tssr161285	transcription start site region 161285	721 bp upstream
Tssr163562	transcription start site region 163562	31 bp upstream
Tssr163563	transcription start site region 163563	9 bp upstream
Tssr163564	transcription start site region 163564	224 bp downstream
Tssr163565	transcription start site region 163565	1612 bp downstream
Tssr163566	transcription start site region 163566	1632 bp downstream