rs233991796 SNP Detail

Summary

• ID
  rs233991796
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84257918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG CAGGCACAAG ACAATTCTGA
  S
  GAACAATATA CTCTTTCCCC TCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319824335	CHEV_1_84276772	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233991796					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84257918 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Rr414250	regulatory region 414250	955 bp distal
Tssr12655	transcription start site region 12655	1877 bp upstream
Tssr12656	transcription start site region 12656	1818 bp upstream
Tssr12657	transcription start site region 12657	1761 bp upstream
Tssr12658	transcription start site region 12658	1738 bp upstream
Tssr12659	transcription start site region 12659	1711 bp upstream
Tssr12660	transcription start site region 12660	1265 bp upstream
Tssr12661	transcription start site region 12661	255 bp upstream
Tssr12662	transcription start site region 12662	1740 bp downstream
Tssr12663	transcription start site region 12663	1789 bp downstream