rs233994951 SNP Detail

Summary

• ID
  rs233994951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90980184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCTTTCT GTGTCTACTC
  TCTGGTCTAC CCAGTCCTTC GAAGCACTAC CCAGAGACTT AGTACCAGAA TGCTGCTGCC
  CCACATGTGC ATAAGCCAGC GCACACTGGT TCCTTGTTAC CAAAAAAGCG TGTCAGCCGG
  GCTCAGATGT GACTGGCTTC TCTAGATCTT TCTGGAGTCT CCAGTACAGA GAAACAAGGC
  R
  GGGGGCCCTC TGATTTTCCT TTTGAGCCCG AAGAAGGCTC TTCTAGGGTG GAGAAAACAG
  GTCACCCAGG CCATGTGCTC CTGTCCATAG CGCACAACAC TGGAACCTTC TGGTTGCTTG
  CCCGCTTGGC TTTAAGTTTA AATCAGGGGT GCTCCTGCCC AGTGGACGTG GAAGGCGCGT
  GCTGCGAGTC GGGTCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350468150	MGP_WTSI_1_92949039	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233994951					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468150	MGP_WTSI_1_92949039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90980184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	48 bp proximal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr18304	regulatory region 18304	784 bp distal
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	299 bp upstream
Tssr8032	transcription start site region 8032	712 bp upstream
Tssr8033	transcription start site region 8033	960 bp upstream
Tssr8034	transcription start site region 8034	1060 bp upstream
Tssr8035	transcription start site region 8035	1083 bp upstream
Tssr8036	transcription start site region 8036	1089 bp upstream
Tssr8037	transcription start site region 8037	1511 bp upstream
Tssr12924	transcription start site region 12924	354 bp downstream
Tssr12925	transcription start site region 12925	372 bp downstream
Tssr12926	transcription start site region 12926	392 bp downstream
Tssr12927	transcription start site region 12927	425 bp downstream
Tssr12928	transcription start site region 12928	575 bp downstream
Tssr12929	transcription start site region 12929	1384 bp downstream