rs233995619 SNP Detail

Summary

• ID
  rs233995619
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143908502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCCCGC CGCAGCCACG
  TTCCCTCCCG AGCTCTGCCT AGGGAAGTGA GGGTGCAATT CACAAGTTGC AAATAGTTCG
  GGGTTTCGGC AAGGCCAGGG CTGGGGAGAG AGGGGCGGGG GAGAGGAGGA AGGGAAAGGC
  CGAGGGGGAG ATGTAGGTGG TGGGAGGGGA GGCAAGGTGG CGAGAGTGTT GGGGGGGGGG
  K
  GGGTGCTGGG TGTAAAGTTG CGAAACTGGT TTTGCGTATT TTAAACAGCA CCTTTCACAT
  GCCATTGTGG TGACCGCCAT CTCCCATTAT TGTTCCAAAT CTCATTTCAT TTTGAAGATC
  AATGAGTGTT TTCAGGACAC AGGCAAGGAT AATAGATCAT TGAACTTTAG GATGCCTGTT
  AACTTCCTAT ACAAACACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	SPRET/EiJ	SWR/J	WSB/EiJ
ss360062403	MGP_WTSI_3_143865705	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	T	T	G	T	G	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	SPRET/EiJ	SWR/J	WSB/EiJ
rs233995619					SNP	T	G	T	T	G	T	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062403	MGP_WTSI_3_143865705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143908502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	80 bp distal
Cpgi13895	CpG island 13895	1809 bp proximal
Lmo4	LIM domain only 4	Intron
Rr406521	regulatory region 406521	273 bp proximal
Rr586599	regulatory region 586599	735 bp distal
Rr586600	regulatory region 586600	within coordinates
Rr586601	regulatory region 586601	1146 bp proximal
Tssr35962	transcription start site region 35962	1798 bp upstream
Tssr35963	transcription start site region 35963	788 bp upstream
Tssr35964	transcription start site region 35964	772 bp upstream
Tssr35965	transcription start site region 35965	396 bp upstream
Tssr35966	transcription start site region 35966	374 bp upstream
Tssr35967	transcription start site region 35967	126 bp upstream