rs234000553 SNP Detail

Summary

• ID
  rs234000553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116549298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATTCTC ACTTCTGTCA
  TCTGGCATGG TAAGTTTTTG GTCTATGTGG TACGTGAAAT TTTTTGTTAT TTATTTAAGT
  ATATGAGTAC TATAGCTGTA CAGATGGTTG TGAGTCTTCA TGTGGTTGTT GGGAATTGAA
  TTTTAAGACC TCTGCTTGCT CTGGTCAACC CAGCTTGCTC CAGTCAGCCC CGCTCACATC
  R
  GCCAGCCCCA CTCTCAGTCC ATCCAGCCCA AAGACTTATT ATACATTAAG TACACAGTAG
  CTGTCTTCAG ATGTGCCAGA AGAGGGCTTC AGATCTCATT ATGGGTGGTT GTGAGCCATG
  TGGTTGCTGG GATTTGAACT CAGAACCTTT GGAAGAGAAG TCAATGCTCT TAACCACTGA
  GCTATCTCAC CCGCCCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277795	CHEV_4_116364706	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234000553					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116549298 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38557	transcription start site region 38557	1404 bp downstream
Tssr38558	transcription start site region 38558	1042 bp downstream
Tssr38559	transcription start site region 38559	202 bp downstream
Tssr38560	transcription start site region 38560	164 bp downstream
Tssr38561	transcription start site region 38561	1618 bp upstream
Tssr38562	transcription start site region 38562	1716 bp upstream
Tssr38563	transcription start site region 38563	1846 bp upstream
Tssr38564	transcription start site region 38564	1979 bp upstream