rs234004854 SNP Detail

Summary

• ID
  rs234004854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72760576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGTCTG TAGAGGGAAG
  CCAGTTCCTC CACCCGGGCT GCCTGAAGAG GCCACGACCC TGGAGGATTC TAACCCAACC
  GATCCAGGGG CCCCAGCACC ACCGCGAGGG CCTAAAGCAA CAGTCTCAGG GATCACTTCA
  AGGTTTCCAG TTGCCTAGAC AACGAGCCCT GGGTCAGAGC AACAACCCTT CCAGGATCTG
  Y
  CTGCAACTGT AGCCTCAGGC AGCAGTTCCA GCCCTCAGCC TGCTCACCAG TCCAGGTGAC
  ATGCCGGTGC TCTCCACTCC CCGGCCCTCA CGGGTGACCA CGCTGAAGCG CACAGCTGTG
  GTCCTGGCCC TCACAGCCTA TGGAGTCCAC AAAATCTACC CTCTAGTACG GCAGTGTCTG
  ACTCCTGCCA GAGGTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403774843	MGP_WTSI_X_70962309	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234004854					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403774843	MGP_WTSI_X_70962309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72760576 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Bcap31	B cell receptor associated protein 31	795 bp upstream
Cpgi22777	CpG island 22777	352 bp distal
Cpgi22778	CpG island 22778	89 bp proximal
Gm61833	predicted gene, 61833	642 bp downstream
Rr406105	regulatory region 406105	269 bp downstream
Rr691928	regulatory region 691928	806 bp distal
Rr691929	regulatory region 691929	1275 bp distal
Rr691930	regulatory region 691930	1033 bp distal
Rr691931	regulatory region 691931	220 bp distal
Rr691932	regulatory region 691932	1479 bp proximal
Tssr161281	transcription start site region 161281	352 bp downstream
Tssr161282	transcription start site region 161282	220 bp downstream
Tssr161283	transcription start site region 161283	191 bp downstream
Tssr161284	transcription start site region 161284	171 bp downstream
Tssr161285	transcription start site region 161285	within coordinates
Tssr163562	transcription start site region 163562	783 bp upstream
Tssr163563	transcription start site region 163563	761 bp upstream
Tssr163564	transcription start site region 163564	504 bp upstream
Tssr163565	transcription start site region 163565	860 bp downstream
Tssr163566	transcription start site region 163566	880 bp downstream