rs234012907 SNP Detail

Summary

• ID
  rs234012907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:54981234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCAGTG GCCCTCTGAA
  CAAACCACTG CAGATGCAAC GTCCTTTGAA ACATAGGAGG TGTTTGTTTG TTTTCTCTCC
  TAAGAGATGA GAGATTATTT GAGATTGAAA ACAGGCTATT TCTGGGCAGG CTGAGCTCTG
  GCGAGTTTTT CCTTCTCTAA CCAAAATGAT TTAACTGTAT CTTTTCTTTC CTACCTTCAA
  Y
  TTGCTGTTTA AACGAAGACT TAAGATATAC GCACATGACT CCCAGGCTGG GGTGGAGTCA
  TACTCCCTCT TCCCCTTCTC CTACACTCGC ATCTCATTTC AAATGTACAG AAAAGGCAAT
  GCCAGGCTTT CTTGAAGGAT ATCAGCTGTT ATATCAAATG TGATGAATCC CAGGTCACTT
  CTTTCTCTAG GGCCCGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374743812	MGP_WTSI_8_55613552	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234012907					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374743812	MGP_WTSI_8_55613552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:54981234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20350	CpG island 20350	1102 bp proximal
Rr400849	regulatory region 400849	1760 bp upstream
Rr663552	regulatory region 663552	1789 bp proximal
Spcs3	signal peptidase complex subunit 3 homolog (S. cerevisiae)	within coordinates
Tssr77367	transcription start site region 77367	168 bp downstream
Tssr77368	transcription start site region 77368	1407 bp upstream
Tssr81305	transcription start site region 81305	1150 bp downstream
Tssr81306	transcription start site region 81306	1203 bp downstream
Tssr81307	transcription start site region 81307	1736 bp downstream
Tssr81308	transcription start site region 81308	1752 bp downstream