rs234018842 SNP Detail

Summary

• ID
  rs234018842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAAAATG TTTTCTTTTT
  TGGTGTAGAG GGTAATGAGG CTTCCTGTGA CTTTAGACTT AACTCTCCAG GAAAACACCT
  TATGAACTTG TAATTATTAT TCTGGGACGG AGAAGGAAAA ATAAACGTAA AATAACAAAC
  TTCAAAGTTG AAAGCAAAGT TTTTTGTTTT GTTTTGTTTT GTTTTTTTCT TTTTTTTGTC
  Y
  CTCAACAGAC ATTAATGTCA TAAGACATTT TGGTTGTAAG TGCAAAAGTA TTAGTGGCTC
  CTAATGTATA AAGAACAGGC AAATTACTAA TCTACAAGTC TAAACAAACA AACAAAAATT
  GTTTCTAAGT TTCTTCCCCA TGCATTCACA AGTGGTTATC GTTCAAAAAC AATAACTATA
  ATTAATTAGA ACCCAGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss359356980	MGP_WTSI_3_116297069	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs234018842					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359356980	MGP_WTSI_3_116297069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387800 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13737	CpG island 13737			325 bp proximal
Rr397965	regulatory region 397965			612 bp upstream
Rr583746	regulatory region 583746			299 bp proximal
Rr583747	regulatory region 583747			596 bp proximal
Rr583748	regulatory region 583748			677 bp proximal
Rr583749	regulatory region 583749			870 bp proximal
Rr583750	regulatory region 583750			1038 bp proximal
Sass6	SAS-6 centriolar assembly protein			831 bp upstream
Trmt13	tRNA methyltransferase 13			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr31360	transcription start site region 31360			808 bp upstream
Tssr35316	transcription start site region 35316			665 bp downstream
Tssr35317	transcription start site region 35317			697 bp downstream