rs234023344 SNP Detail

Summary

• ID
  rs234023344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAAACA AAACAAAACA
  AAAAAACCAA AAACTCTATT GACTTGAAGC ACAAACCCCT TTGGTGACAC AAAGTCCCTT
  GAAGTGAAAT GAGGCTCCTA ATAGTCCACA TTTATATAAA TGCCTGATTA AAGGACACAC
  TGAAGAAAAA ACCATCAGGG ATGTTGAGTG ACATCCAGCA ATGTATCACT TTTTAAAATC
  Y
  ATAATAATCC TTTATCCCAA ATATATCGAA GCCCAAAGAT TGTTGCTAAA GGATTGGGAA
  TTTGCATTGT GCTAAGACAA GACTACTAAT CCCTTATATC ATGTCTTCAA TGGTTGCATA
  TGAATTATCT GTAGTAGGGT GCACGGCTAT TATTTAACAA GTTTGATGTG GTGTGGGTGG
  CTTCCAAAGT AAATCTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072555	MGP_WTSI_11_83390329	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234023344					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072555	MGP_WTSI_11_83390329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467653 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1799 bp proximal
Tssr103716	transcription start site region 103716	1461 bp downstream
Tssr109682	transcription start site region 109682	1833 bp upstream
Tssr109683	transcription start site region 109683	1785 bp upstream
Tssr109684	transcription start site region 109684	1759 bp upstream
Tssr109685	transcription start site region 109685	1718 bp upstream
Tssr109686	transcription start site region 109686	1649 bp upstream
Tssr109687	transcription start site region 109687	1595 bp upstream
Tssr109688	transcription start site region 109688	1554 bp upstream
Tssr109689	transcription start site region 109689	1512 bp upstream
Tssr109690	transcription start site region 109690	1503 bp upstream
Tssr109691	transcription start site region 109691	1489 bp upstream
Tssr109692	transcription start site region 109692	1461 bp upstream
Tssr109693	transcription start site region 109693	1344 bp upstream
Tssr109694	transcription start site region 109694	917 bp upstream
Tssr109695	transcription start site region 109695	869 bp upstream
Tssr109696	transcription start site region 109696	120 bp downstream
Tssr109697	transcription start site region 109697	310 bp downstream
Tssr109698	transcription start site region 109698	1593 bp downstream
Tssr109699	transcription start site region 109699	1640 bp downstream
Tssr109700	transcription start site region 109700	1669 bp downstream
Tssr109701	transcription start site region 109701	1702 bp downstream
Tssr109702	transcription start site region 109702	1759 bp downstream
Tssr109703	transcription start site region 109703	1769 bp downstream
Tssr109704	transcription start site region 109704	1793 bp downstream