rs234043199 SNP Detail

Summary

• ID
  rs234043199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112501458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTAAAGG CGTGCACGAC
  CACCGCCTGG CAATAAAGAG AGAAATTAAT GCCACCAAAA TTTTTCCTCC TCTTGTCACA
  CTAGGACTGA TTACTATTCA GTCTACAAGT CTGTGTCCCT CTGGACTGGG CTTTTTTTTC
  ATGCAAATCT GTACAAGCTT TCAACATTAG AATTCCAAAT CCTACAGTGG GGGTGGGGGG
  R
  TGTGGGGGCT GGGGGATGGG GCTGGTGGGG ATCAGATCTC AAGGCAAGAT AATGTCATCA
  CATCTACCTG GCTACTGTCC AAGAACAAAA TTCAGTTTAA GCACTGCTCC TGCAAACAGC
  ACGCATCAGT TGTTAGGTGC TGTGCTCATT GCAGAATGAG ACTGAGAAAA CAGGGACACG
  GCCTCAACAA AATGTCCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss389998181	MGP_WTSI_13_113155132	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs234043199					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389998181	MGP_WTSI_13_113155132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112501458 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
D13Mit260	DNA segment, Chr 13, Massachusetts Institute of Technology 260	672 bp proximal
Gm48837	predicted gene, 48837	280 bp upstream
Rr278287	regulatory region 278287	1656 bp proximal
Rr282338	regulatory region 282338	1258 bp distal
Rr282339	regulatory region 282339	544 bp proximal
Tssr121108	transcription start site region 121108	1488 bp downstream
Tssr121109	transcription start site region 121109	1456 bp downstream
Tssr121110	transcription start site region 121110	1220 bp upstream