rs234057848 SNP Detail

Summary

• ID
  rs234057848
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70909391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTCCAA CTGCTGAAAT
  GGAAAAAGAG CTTCTTGAAG CCGATCAACC GCAAAACAAA ATTTCATCAT GAACCACGAA
  GGATGAGTAG ATCTAATCAT TTCTGTCCCT TGGAATACAT TTCTGTCTTG CTTGTGACAG
  CTGGTAAGAG ATTCTTTAGA ATTTGCACAA CCGTTTTGTA TAAACACACA ATGTCAGTTT
  K
  ATGTTGCAAT ATTTGAGGAT GCTATAAGGC AGGCGGGTGA GCATATTTTA GAGACAAGCC
  AACAGCATCT TTTACAAATC TGTGCGTCAC GTGGTCACCA CCTCAGCTAG GTGAGACAAC
  TCGGAATAAG GGGTTTAACT AAGACCCTGC TACCATTAGG GATAGGTACA AGCGGCCAGA
  CACTTATATC CATAGGCCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323738900	CHEV_11_70832067	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234057848					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70909391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	399 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1046 bp upstream
Rr369277	regulatory region 369277	1214 bp upstream
Rr402697	regulatory region 402697	640 bp upstream
Rr450471	regulatory region 450471	667 bp proximal
Rr450472	regulatory region 450472	1057 bp proximal
Rr450473	regulatory region 450473	1266 bp proximal
Tssr102806	transcription start site region 102806	1005 bp upstream
Tssr102807	transcription start site region 102807	1028 bp upstream
Tssr102808	transcription start site region 102808	1061 bp upstream
Tssr102809	transcription start site region 102809	1076 bp upstream
Tssr102810	transcription start site region 102810	1303 bp upstream
Tssr102811	transcription start site region 102811	1330 bp upstream
Tssr109052	transcription start site region 109052	44 bp upstream
Tssr109053	transcription start site region 109053	668 bp downstream
Tssr109054	transcription start site region 109054	705 bp downstream