rs234066143 SNP Detail

Summary

• ID
  rs234066143
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCCGGG GCGGGGCGCG
  GGGGCGGGCC GGCCGGGGCG GGGCGGACTA GGAAGTCGGA GGCCTCCCCC ACCCTCCAGC
  CTCGGGTTTT CTGCAAGCTT TGCCCTCCGC ACAGTCCCGC ACACCCTGCT TCTCTCCACT
  CTTCGCCCCG TGAGCCCTGA GACCCCTTGA GTCTGGCCTC TCAAGGTCAG GTCTCCCCGC
  W
  TTCACTTGGC ATCTCCCCCC CACCCCCCAG CAGGGGCCCT AAGCTAGGCG CTGGGCATTT
  GTTCTCTTCC TAGTATCTCA CTCCCCGCCC CGCAGCCTCC GCGGGAAGGC TGAGAAATGC
  CTTCCGCTCA GCCCGGGAAT CTAGAGGTAG CCGCGGCTGG CTAGGGGTTA GCCGGAATGG
  GTCAGGCTGG GGCAGTCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353659	CHEV_7_109398870	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234066143					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	238 bp upstream
Rr652562	regulatory region 652562	279 bp distal
Rr652563	regulatory region 652563	within coordinates
Rr652564	regulatory region 652564	565 bp proximal
Tssr2354	transcription start site region 2354	80 bp downstream
Tssr68328	transcription start site region 68328	663 bp downstream
Tssr68329	transcription start site region 68329	642 bp downstream
Tssr68330	transcription start site region 68330	101 bp downstream
Tssr73939	transcription start site region 73939	982 bp upstream
Tssr73940	transcription start site region 73940	935 bp upstream
Tssr73941	transcription start site region 73941	882 bp upstream
Tssr73942	transcription start site region 73942	797 bp upstream
Tssr73943	transcription start site region 73943	270 bp upstream
Tssr73944	transcription start site region 73944	233 bp upstream
Tssr73945	transcription start site region 73945	218 bp upstream
Tssr73946	transcription start site region 73946	22 bp upstream
Tssr73947	transcription start site region 73947	110 bp downstream
Tssr73948	transcription start site region 73948	135 bp downstream
Tssr73949	transcription start site region 73949	171 bp downstream
Tssr73950	transcription start site region 73950	220 bp downstream